.. contents::

PDB Reader
==========

Main PDB Reader class and methods.

.. autoclass:: molcube.pdbreader.PdbReaderProject
   :members:
   :private-members: _chain_options, _model_options, _option_by_chain, _model_by_chain, _chain_types, _model_defaults
   :member-order: groupwise
   :show-inheritance:

Glycosylation
-------------

.. automodule:: molcube.pdbreader.glycosylation
   :members:
   :show-inheritance:

Schemata
--------

.. autotype:: molcube.pdbreader.pdbreader.AnyChainIdx

.. autotype:: molcube.pdbreader.pdbreader.ChainInfo

molcube.pdbreader.conf
^^^^^^^^^^^^^^^^^^^^^^

Misc. structural definitions and parameters.

.. automodule:: molcube.pdbreader.conf
   :members:
   :show-inheritance:
   :undoc-members:

molcube.pdbreader.literals
^^^^^^^^^^^^^^^^^^^^^^^^^^

These definitions exist for the benefit of type checkers and language servers, to allow them to give more precise hints about what values are allowed for a given argument, or how some return values are structured.

.. automodule:: molcube.pdbreader.literals
   :members:
   :show-inheritance:
   :undoc-members:

molcube.pdbreader.enums
^^^^^^^^^^^^^^^^^^^^^^^

These definitions exist mostly for internal validation values passed to functions.

.. automodule:: molcube.pdbreader.enums
   :members:
   :show-inheritance:
   :undoc-members:

molcube.pdbreader.responses
^^^^^^^^^^^^^^^^^^^^^^^^^^^

This section describes the structure of some data returned by the MolCube servers.

.. automodule:: molcube.pdbreader.responses
   :members:
   :show-inheritance:
   :undoc-members: