User Guide
==========

This section explains the basics of using |project-bf|, and shows some examples of common operations. For an in-depth description of the available modules, functions, classes, etc., see :doc:`../api_reference/index`.

.. toctree::
   :maxdepth: 2
   :caption: Contents:

   pdbreader
   glycosylation
   solution_builder
   membrane_builder
   ligand_modeler
   free_energy